Research workbench
The solution structure of the first thioredoxin domain of mouse protein disulfide-isomerase A4
Analyse The solution structure of the first thioredoxin domain of mouse protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2DJ1
- Type
- protein
- Length
- 140 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein disulfide-isomerase A4
- EC
- 5.3.4.1
- UniProt
- P08003
- Pockets
- 2 · best druggability 0.50
Structure
solution nmr · 1 distinct chain · 28% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein disulfide-isomerase A4 (EC 5.3.4.1) | protein | 140 | 28% helix, 19% strand | P08003 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.50 | 0.85 | 12 | empty |
| 2 | 92 | 0.43 | 0.79 | 22 | empty |
Compared structures
- 2DJ1 · The solution structure of the first thioredoxin domain of mouse Protein… · the same entry in another collection · chain A against A, TM-score 1.00
- P08003 · AlphaFold monomer V2.0 prediction for protein disulfide-isomerase A4 (P08003) · a predicted model of the same protein · chain A against A, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08003
- Elsewhere: RCSB PDB 2DJ1 · PDBe 2DJ1 · UniProt P08003
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