Research workbench

Crystal structure of the carboxy terminal domain of colicin E5 complexed with its inhibitor

Analyse Crystal structure of the carboxy terminal domain of colicin E5 complexed with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2DFX
Type: protein
Length: 198 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Colicin-E5; Colicin-E5 immunity protein
EC: 3.1.-.-
UniProt: P18000, P13476

Structure

x-ray diffraction · 2 distinct chains · 33% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
E	Colicin-E5 (EC 3.1.-.-)	protein	92	24% helix, 37% strand	P18000
I	Colicin-E5 immunity protein	protein	106	41% helix, 21% strand	P13476

Interfaces

1 interface between chains.

E–I · 1339 Å² buried · 28 hydrogen bonds · protein-protein

Compared structures

2DFX · Crystal structure of the carboxy terminal domain of colicin E5 complexed with its… · the same entry in another collection · chain E against E, TM-score 1.00
P18000 · AlphaFold monomer V2.0 prediction for colicin-E5 (P18000) · a predicted model of the same protein · chain E against A, TM-score 0.97
P13476 · AlphaFold monomer V2.0 prediction for colicin-E5 immunity protein (P13476) · a predicted model of the same protein · chain I against A, TM-score 0.76

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P18000
Every structure of UniProt P13476
Elsewhere: RCSB PDB 2DFX · PDBe 2DFX · UniProt P18000 · UniProt P13476

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.