Research workbench
An alternating sheared aa pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. the minor conformation with A6/A5/A16 stack
Analyse An alternating sheared aa pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. the minor… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2DD3
- Type
- RNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'; 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3'
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3' | rna | 10 | — | — |
| B | 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3' | rna | 10 | — | — |
Interfaces
1 interface between chains.
- A–B · 616 Ų buried · 53 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 2DD3 · An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2DD3 · PDBe 2DD3
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