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Crystal structure of a hypothetical protein JW0805 at high pH from escherichia COLI

Analyse Crystal structure of a hypothetical protein JW0805 at high pH from escherichia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2DBN
Type: protein
Length: 403 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein ybiu
UniProt: P75791
Ligands: SO4
Pockets: 3 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein ybiu	protein	403	39% helix, 15% strand	P75791

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	472	0.70	0.80	50	SO4
2	57	0.53	0.88	21	empty
3	91	0.37	0.75	16	empty

Compared structures

2DBN · Crystal Structure of a Hypothetical Protein JW0805 at High pH from Escherichia coli · the same entry in another collection · chain A against A, TM-score 1.00
P75791 · AlphaFold monomer V2.0 prediction for uncharacterized protein ybiu (P75791) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P75791
Elsewhere: RCSB PDB 2DBN · PDBe 2DBN · UniProt P75791

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