Research workbench
Crystal structure of a hypothetical protein JW0805 from escherichia COLI
Analyse Crystal structure of a hypothetical protein JW0805 from escherichia COLI in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2DBI
- Type
- protein
- Length
- 397 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein ybiu
- UniProt
- P75791
- Pockets
- 2 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein ybiu | protein | 397 | 40% helix, 15% strand | P75791 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 451 | 0.68 | 0.79 | 56 | empty |
| 2 | 90 | 0.34 | 0.74 | 15 | empty |
Compared structures
- 2DBI · Crystal Structure of a Hypothetical Protein JW0805 from Escherichia coli · the same entry in another collection · chain A against A, TM-score 1.00
- P75791 · AlphaFold monomer V2.0 prediction for uncharacterized protein ybiu (P75791) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P75791
- Elsewhere: RCSB PDB 2DBI · PDBe 2DBI · UniProt P75791
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