Research workbench
Solution structure of the first ig-like domain of signal-regulatory protein beta-1 (sirp-beta-1)
Analyse Solution structure of the first ig-like domain of signal-regulatory protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2D9C
- Type
- protein
- Length
- 136 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Signal-regulatory protein beta-1
- UniProt
- O00241
- Pockets
- 1 · best druggability 0.32
Structure
solution nmr · 1 distinct chain · 0% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Signal-regulatory protein beta-1 | protein | 136 | 0% helix, 34% strand | O00241 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.32 | 0.74 | 19 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 2D9C · Solution structure of the first ig-like domain of signal-regulatory protein beta-1… · the same entry in another collection · chain A against A, TM-score 1.00
- O00241 · AlphaFold monomer V2.0 prediction for signal-regulatory protein beta-1 (O00241) · a predicted model of the same protein · chain A against A, TM-score 0.82
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O00241
- Elsewhere: RCSB PDB 2D9C · PDBe 2D9C · UniProt O00241
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