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Structure of osmc-like protein of unknown function VCA0330 from vibrio cholerae O1 biovar eltor str. N16961
Analyse Structure of osmc-like protein of unknown function VCA0330 from vibrio cholerae… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2D7V
- Type
- protein
- Length
- 309 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein VCA0330
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 26% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein VCA0330 | protein | 155 | 25% helix, 35% strand | — |
| B | Hypothetical protein VCA0330 | protein | 154 | 26% helix, 34% strand | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 108 | 0.51 | 0.81 | 18 | empty |
| 2 | 78 | 0.46 | 0.81 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 3694 Ų buried · 58 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 2D7V · Structure of OsmC-like Protein of Unknown Function VCA0330 from Vibrio cholerae O1 biovar… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2D7V · PDBe 2D7V
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