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Crystal structure analysis of a non-toxic crystal protein from bacillus thuringiensis

Analyse Crystal structure analysis of a non-toxic crystal protein from bacillus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2D42
Type: protein
Length: 498 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Non-toxic crystal protein
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 67% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Non-toxic crystal protein	protein	249	9% helix, 67% strand	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.34	0.79	17	empty

Interfaces

1 interface between chains.

A–B · 707 Å² buried · 24 hydrogen bonds · protein-protein

Compared structures

2D42 · Crystal structure analysis of a non-toxic crystal protein from Bacillus thuringiensis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2D42 · PDBe 2D42

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