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N-terminal domain of SEC18P

Analyse N-terminal domain of SEC18P in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1CR5
Type: protein
Length: 529 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SEC18P (residues 22 - 210)
UniProt: P18759
Ligands: NEN

Structure

x-ray diffraction · 3 distinct chains · 16% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SEC18P (residues 22 - 210)	protein	178	16% helix, 41% strand	P18759
B	SEC18P (residues 22 - 210)	protein	176	17% helix, 40% strand	P18759
C	SEC18P (residues 22 - 210)	protein	175	16% helix, 42% strand	P18759

Ligands and binding sites

NEN · 1-ethyl-pyrrolidine-2,5-dione · ligand · 6 copies · chains A, B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 6 covalent (covalent ligand).

Compared structures

1CR5 · N-terminal domain of SEC18P · the same entry in another collection · chain A against A, TM-score 1.00
P18759 · AlphaFold monomer V2.0 prediction for vesicular-fusion protein SEC18 (P18759) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P18759
Elsewhere: RCSB PDB 1CR5 · PDBe 1CR5 · UniProt P18759

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