Research workbench
Crystal structure of aluminum-bound ovotransferrin at 2.15 ångström resolution
Analyse Crystal structure of aluminum-bound ovotransferrin at 2.15 ångström resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2D3I
- Type
- protein
- Length
- 670 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ovotransferrin
- UniProt
- P02789
- Ligands
- BCT, AL
- Pockets
- 10 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ovotransferrin | protein | 670 | 36% helix, 19% strand | P02789 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 230 | 0.80 | 0.94 | 39 | empty |
| 2 | 439 | 0.77 | 0.86 | 55 | empty |
| 3 | 282 | 0.57 | 0.77 | 31 | empty |
| 4 | 209 | 0.54 | 0.78 | 21 | empty |
| 5 | 62 | 0.48 | 0.85 | 17 | empty |
Modifications
Observed in the structure: 15 disulfide (disulfide).
Compared structures
- 2D3I · Crystal Structure of Aluminum-Bound Ovotransferrin at 2.15 Angstrom Resolution · the same entry in another collection · chain A against A, TM-score 1.00
- P02789 · AlphaFold monomer V2.0 prediction for ovotransferrin (P02789) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02789
- Elsewhere: RCSB PDB 2D3I · PDBe 2D3I · UniProt P02789
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