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Crystal structure of the C-terminal fragment of rabbit skeletal alpha- tropomyosin

Analyse Crystal structure of the C-terminal fragment of rabbit skeletal alpha… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2D3E
Type
protein
Length
520 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
General control protein GCN4 and tropomyosin 1 alpha chain
UniProt
P03069, P58772

Structure

x-ray diffraction · 1 distinct chain · 97% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B, C, DGeneral control protein GCN4 and tropomyosin 1 alpha chainprotein13097% helix, 0% strandP03069, P58772

Interfaces

6 interfaces between chains.

  • A–B · 3409 Ų buried · 18 hydrogen bonds · protein-protein
  • C–D · 3404 Ų buried · 15 hydrogen bonds · protein-protein
  • B–D · 384 Ų buried · 4 hydrogen bonds · protein-protein
  • A–D · 342 Ų buried · 1 hydrogen bond · protein-protein
  • B–C · 340 Ų buried · 1 hydrogen bond · protein-protein

Compared structures

  • 2D3E · Crystal structure of the C-Terminal fragment of rabbit skeletal alpha-tropomyosin · the same entry in another collection · chain B against B, TM-score 1.00
  • P58772 · AlphaFold monomer V2.0 prediction for tropomyosin alpha-1 chain (P58772) · a predicted model of the same protein · chain A against A, TM-score 0.93
  • P03069 · AlphaFold monomer V2.0 prediction for general control transcription factor GCN4 (P03069) · a predicted model of the same protein · chain B against A, TM-score 0.41

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