Research workbench

Run domain of RAP2 interacting protein X, crystallized in C2 space group

Analyse Run domain of RAP2 interacting protein X, crystallized in C2 space group in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2CXF
Type: protein
Length: 167 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RAP2 interacting protein X
UniProt: Q9D394
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 56% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RAP2 interacting protein X	protein	167	56% helix, 1% strand	Q9D394

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.36	0.78	15	empty

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

2CXF · RUN domain of Rap2 interacting protein x, crystallized in C2 space group · the same entry in another collection · chain A against A, TM-score 1.00
Q9D394 · AlphaFold monomer V2.0 prediction for protein RUFY3 (Q9D394) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9D394
Elsewhere: RCSB PDB 2CXF · PDBe 2CXF · UniProt Q9D394

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