Research workbench
Bovine viral diarrhea virus CP7-R12 RNA-dependent RNA polymerase
Analyse Bovine viral diarrhea virus CP7-R12 RNA-dependent RNA polymerase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2CJQ
- Type
- protein
- Length
- 546 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA-directed RNA polymerase
- EC
- 2.7.7.48
- UniProt
- Q96662
- Pockets
- 5 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA-directed RNA polymerase (EC 2.7.7.48) | protein | 546 | 46% helix, 15% strand | Q96662 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 458 | 0.58 | 0.74 | 49 | empty |
| 2 | 87 | 0.42 | 0.79 | 20 | empty |
| 3 | 94 | 0.40 | 0.77 | 21 | empty |
| 4 | 99 | 0.36 | 0.75 | 20 | empty |
| 5 | 84 | 0.33 | 0.73 | 16 | empty |
Compared structures
- 2CJQ · Bovine viral diarrhea virus CP7-R12 RNA-dependent RNA polymerase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96662
- Elsewhere: RCSB PDB 2CJQ · PDBe 2CJQ · UniProt Q96662
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