Research workbench
Structure-based functional annotation: yeast YMR099C codes for a D- hexose-6-phosphate mutarotase. complex with glucose-6-phosphate
Analyse Structure-based functional annotation: yeast YMR099C codes for a D… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2CIR
- Type
- protein
- Length
- 288 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hexose-6-phosphate mutarotase
- EC
- 5.1.3.15
- UniProt
- Q03161
- Ligands
- BG6
- Pockets
- 3 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hexose-6-phosphate mutarotase (EC 5.1.3.15) | protein | 288 | 10% helix, 49% strand | Q03161 |
Ligands and binding sites
- BG6 · 6-O-phosphono-beta-D-glucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 167 | 0.47 | 0.76 | 32 | BG6 |
| 2 | 130 | 0.42 | 0.76 | 21 | empty |
| 3 | 51 | 0.25 | 0.73 | 12 | empty |
Modifications
Observed in the structure: 1 modified (oxidation).
Compared structures
- 2CIR · Structure-based functional annotation: Yeast ymr099c codes for a D- hexose-6-phosphate… · the same entry in another collection · chain A against A, TM-score 1.00
- Q03161 · AlphaFold monomer V2.0 prediction for glucose-6-phosphate 1-epimerase (Q03161) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q03161
- Elsewhere: RCSB PDB 2CIR · PDBe 2CIR · UniProt Q03161
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