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Crystal structure of dimeric human cystatin F

Analyse Crystal structure of dimeric human cystatin F in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2CH9
Type
protein
Length
126 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Cystatin F
UniProt
O76096
Ligands
NAG, FUL, ZN

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 43% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACystatin Fprotein12618% helix, 43% strandO76096

Ligands and binding sites

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
  • FUL · beta-L-fucopyranose · sugar · chains A
  • ZN · Zinc ion · metal · 5 copies · chains A
  • ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 2 disulfide, 2 glycan (disulfide, N-glycosylation).

Compared structures

  • 2CH9 · Crystal structure of dimeric human cystatin F · the same entry in another collection · chain A against A, TM-score 1.00
  • O76096 · AlphaFold monomer V2.0 prediction for cystatin-F (O76096) · a predicted model of the same protein · chain A against A, TM-score 0.96

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