Research workbench
Crystal structure of SDSA1, an alkylsulfatase from pseudomonas aeruginosa.
Analyse Crystal structure of SDSA1, an alkylsulfatase from pseudomonas aeruginosa. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2CG3
- Type
- protein
- Length
- 627 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SDSA1
- UniProt
- Q9I5I9
- Ligands
- ZN
- Pockets
- 4 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SDSA1 | protein | 627 | 42% helix, 17% strand | Q9I5I9 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1046 | 0.77 | 0.79 | 84 | empty |
| 2 | 941 | 0.73 | 0.77 | 57 | empty |
| 3 | 109 | 0.39 | 0.75 | 18 | empty |
| 4 | 52 | 0.33 | 0.77 | 16 | empty |
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 2CG3 · Crystal structure of SdsA1, an alkylsulfatase from Pseudomonas aeruginosa. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I5I9
- Elsewhere: RCSB PDB 2CG3 · PDBe 2CG3 · UniProt Q9I5I9
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