Research workbench
Crystal structure of SDSA1, an alkylsulfatase from pseudomonas aeruginosa, in complex with sulfate
Analyse Crystal structure of SDSA1, an alkylsulfatase from pseudomonas aeruginosa, in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2CG2
- Type
- protein
- Length
- 629 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SDSA1
- UniProt
- Q9I5I9
- Ligands
- ZN, SO4
- Pockets
- 4 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SDSA1 | protein | 629 | 41% helix, 17% strand | Q9I5I9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 912 | 0.77 | 0.79 | 70 | SO4 |
| 2 | 942 | 0.73 | 0.77 | 59 | empty |
| 3 | 71 | 0.35 | 0.77 | 13 | empty |
| 4 | 61 | 0.30 | 0.74 | 17 | empty |
Compared structures
- 2CG2 · Crystal structure of SdsA1, an alkylsulfatase from Pseudomonas aeruginosa, in complex… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I5I9
- Elsewhere: RCSB PDB 2CG2 · PDBe 2CG2 · UniProt Q9I5I9
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