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Refinement of RNase P P4 stemloop structure using residual dipolar couplings - COBALT(III) hexammine complex structure

Analyse Refinement of RNase P P4 stemloop structure using residual dipolar couplings… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2CD5
Type: RNA
Length: 27 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-R(*GP*GP*AP*AP*GP*UP*CP*CP*GP*GP*UP*CP*UP *UP*CP*GP*GP*AP*CP*CP*GP*GP*CP*UP*UP*CP*C)-3'
Ligands: NCO
Pockets: 1 · best druggability 0.41

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	5'-R(GPGPAPAPGPUPCPCPGPGPUPCPUP UPCPGPGPAPCPCPGPGPCPUPUPCP*C)-3'	rna	27	—	—

Ligands and binding sites

NCO · Cobalt hexammine(iii) · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	174	0.41	0.74	12	NCO

Compared structures

2CD5 · Refinement of RNase P P4 stemloop structure using residual dipolar couplings… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2CD5 · PDBe 2CD5

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