Research workbench
The canine parvovirus empty capsid structure
Analyse The canine parvovirus empty capsid structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2CAS
- Type
- protein
- Length
- 548 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Canine parvovirus empty capsid (strain D) viral protein 2
- UniProt
- Q11213
- Pockets
- 10 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Canine parvovirus empty capsid (strain D) viral protein 2 | protein | 548 | 9% helix, 30% strand | Q11213 |
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.70 | 0.98 | 16 | empty |
| 2 | 498 | 0.69 | 0.79 | 76 | empty |
| 3 | 112 | 0.67 | 0.90 | 27 | empty |
| 4 | 215 | 0.55 | 0.78 | 29 | empty |
| 5 | 160 | 0.50 | 0.78 | 23 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 2CAS · The canine parvovirus empty capsid structure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q11213
- Elsewhere: RCSB PDB 2CAS · PDBe 2CAS · UniProt Q11213
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