Research workbench
D83R mutant of asaris suum major sperm protein (msp)
Analyse D83R mutant of asaris suum major sperm protein (msp) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BVU
- Type
- protein
- Length
- 493 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Major sperm protein, isoform alpha
- UniProt
- P27439
- Pockets
- 3 · best druggability 0.55
Structure
x-ray diffraction · 2 distinct chains · 3% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Major sperm protein, isoform alpha | protein | 123 | 2% helix, 47% strand | P27439 |
| D | Major sperm protein, isoform alpha | protein | 124 | 3% helix, 45% strand | P27439 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 154 | 0.55 | 0.81 | 24 | empty |
| 2 | 106 | 0.51 | 0.82 | 19 | empty |
| 3 | 67 | 0.31 | 0.74 | 15 | empty |
Interfaces
3 interfaces between chains.
- A–B · 692 Ų buried · 13 hydrogen bonds · protein-protein
- C–D · 662 Ų buried · 10 hydrogen bonds · protein-protein
- B–C · 579 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P27439
- Elsewhere: RCSB PDB 2BVU · PDBe 2BVU · UniProt P27439
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