Research workbench
Structure of lactococcal bacteriophage P2 receptor binding protein in complex with a llama vhh domain
Analyse Structure of lactococcal bacteriophage P2 receptor binding protein in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BSE
- Type
- protein
- Length
- 687 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Receptor binding protein; Llama immunoglobulin
- UniProt
- Q71AW2
- Pockets
- 1 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 3% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Receptor binding protein | protein | 107 | 3% helix, 53% strand | Q71AW2 |
| D, E, F | Llama immunoglobulin | protein | 122 | 2% helix, 53% strand | — |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 252 | 0.82 | 0.94 | 21 | empty |
Interfaces
9 interfaces between chains.
- B–C · 959 Ų buried · 15 hydrogen bonds · protein-protein
- A–C · 952 Ų buried · 13 hydrogen bonds · protein-protein
- A–B · 951 Ų buried · 14 hydrogen bonds · protein-protein
- C–F · 606 Ų buried · 13 hydrogen bonds · protein-protein
- B–D · 580 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 2BSE · Structure of Lactococcal Bacteriophage p2 Receptor Binding Protein in complex with a… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q71AW2
- Elsewhere: RCSB PDB 2BSE · PDBe 2BSE · UniProt Q71AW2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.