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Crystal structure at 1.7 ångströms of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target
Analyse Crystal structure at 1.7 ångströms of the bovine papillomavirus-1 E2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BOP
- Type
- protein + DNA
- Length
- 102 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'- D(*CP*CP*GP*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*TP*CP*G )-3'); Protein (E2)
- UniProt
- P03122
- Ligands
- YB
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | DNA (5'- D(*CP*CP*GP*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*TP*CP*G )-3') | dna | 17 | — | — |
| A | Protein (E2) | protein | 85 | 32% helix, 35% strand | P03122 |
Ligands and binding sites
- YB · Ytterbium (III) ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- B–A · 351 Ų buried · 9 hydrogen bonds · protein-nucleic
Compared structures
- 2BOP · Crystal structure at 1.7 ångströms of the bovine papillomavirus-1 E2 DNA-binding domain… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03122
- Elsewhere: RCSB PDB 2BOP · PDBe 2BOP · UniProt P03122
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