Research workbench
Apo-structure of the C-terminal decarboxylase domain of arna
Analyse Apo-structure of the C-terminal decarboxylase domain of arna in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BLL
- Type
- protein
- Length
- 330 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein yfbg
- EC
- 4.1.1.35
- UniProt
- P77398
- Pockets
- 3 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein yfbg (EC 4.1.1.35) | protein | 330 | 45% helix, 18% strand | P77398 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 537 | 0.73 | 0.81 | 42 | empty |
| 2 | 119 | 0.41 | 0.76 | 22 | empty |
| 3 | 73 | 0.38 | 0.78 | 11 | empty |
Compared structures
- 2BLL · Apo-structure of the C-terminal decarboxylase domain of ArnA · the same entry in another collection · chain A against A, TM-score 1.00
- P77398 · AlphaFold monomer V2.0 prediction for bifunctional polymyxin resistance protein arna… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P77398
- Elsewhere: RCSB PDB 2BLL · PDBe 2BLL · UniProt P77398
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