Research workbench
The X-ray structure of the H43G listeria innocua dps mutant
Analyse The X-ray structure of the H43G listeria innocua dps mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BKC
- Type
- protein
- Length
- 3,599 residues
- Chains
- 24
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Non-heme iron-containing ferritin
- UniProt
- P80725
- Pockets
- 20 · best druggability 0.64
Structure
x-ray diffraction · 2 distinct chains · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, S, T, U, V, X, Y | Non-heme iron-containing ferritin | protein | 150 | 76% helix, 0% strand | P80725 |
| R | Non-heme iron-containing ferritin | protein | 149 | 76% helix, 0% strand | P80725 |
Pockets
20 pockets found on a 1 Å grid, 15 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 530 | 0.64 | 0.76 | 49 | empty |
| 2 | 365 | 0.59 | 0.76 | 49 | empty |
| 3 | 242 | 0.59 | 0.80 | 29 | empty |
| 4 | 267 | 0.59 | 0.79 | 32 | empty |
| 5 | 254 | 0.58 | 0.79 | 31 | empty |
Interfaces
62 interfaces between chains.
- V–Y · 1287 Ų buried · 14 hydrogen bonds · protein-protein
- M–O · 1264 Ų buried · 16 hydrogen bonds · protein-protein
- N–P · 1259 Ų buried · 14 hydrogen bonds · protein-protein
- J–L · 1258 Ų buried · 16 hydrogen bonds · protein-protein
- B–D · 1256 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 2BKC · The X-ray structure of the H43G Listeria innocua Dps mutant · the same entry in another collection · chain I against I, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80725
- Elsewhere: RCSB PDB 2BKC · PDBe 2BKC · UniProt P80725
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.