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The X-ray crystal structure of listeria innocua dps H31G- H43G mutant.
Analyse The X-ray crystal structure of listeria innocua dps H31G- H43G mutant. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BJY
- Type
- protein
- Length
- 1,801 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Non-heme iron-containing ferritin
- UniProt
- P80725
- Pockets
- 20 · best druggability 0.66
Structure
x-ray diffraction · 4 distinct chains · 74% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, D, E, F, G, I, J | Non-heme iron-containing ferritin | protein | 150 | 75% helix, 0% strand | P80725 |
| B | Non-heme iron-containing ferritin | protein | 151 | 74% helix, 0% strand | P80725 |
| H, K | Non-heme iron-containing ferritin | protein | 149 | 75% helix, 0% strand | P80725 |
| L | Non-heme iron-containing ferritin | protein | 152 | 74% helix, 0% strand | P80725 |
Pockets
20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 567 | 0.66 | 0.76 | 65 | empty |
| 2 | 502 | 0.65 | 0.77 | 62 | empty |
| 3 | 311 | 0.62 | 0.79 | 47 | empty |
| 4 | 441 | 0.61 | 0.76 | 52 | empty |
| 5 | 405 | 0.59 | 0.75 | 47 | empty |
Interfaces
30 interfaces between chains.
- A–C · 1278 Ų buried · 16 hydrogen bonds · protein-protein
- J–L · 1272 Ų buried · 16 hydrogen bonds · protein-protein
- F–H · 1264 Ų buried · 16 hydrogen bonds · protein-protein
- B–D · 1262 Ų buried · 14 hydrogen bonds · protein-protein
- E–G · 1258 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 2BJY · The X-ray crystal structure of Listeria innocua Dps H31G-H43G mutant. · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80725
- Elsewhere: RCSB PDB 2BJY · PDBe 2BJY · UniProt P80725
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