Research workbench
Structure of the compact lumenal domain of yeast IRE1
Analyse Structure of the compact lumenal domain of yeast IRE1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BE1
- Type
- protein
- Length
- 610 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SERINE/THREONINE-protein KINASE/ENDORIBONUCLEASE IRE1; Peptide
- UniProt
- P32361
- Pockets
- 8 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 12% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | SERINE/THREONINE-protein KINASE/ENDORIBONUCLEASE IRE1 | protein | 301 | 12% helix, 43% strand | P32361 |
| D | Peptide | protein | 8 | 0% helix, 0% strand | — |
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 412 | 0.69 | 0.81 | 55 | empty |
| 2 | 388 | 0.67 | 0.80 | 51 | empty |
| 3 | 155 | 0.55 | 0.81 | 26 | empty |
| 4 | 150 | 0.52 | 0.80 | 23 | empty |
| 5 | 139 | 0.50 | 0.79 | 23 | empty |
Interfaces
2 interfaces between chains.
- A–B · 1310 Ų buried · 13 hydrogen bonds · protein-protein
- B–D · 270 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 2BE1 · Structure of the compact lumenal domain of yeast Ire1 · the same entry in another collection · chain A against A, TM-score 1.00
- P32361 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein KINASE/ENDORIBONUCLEASE… · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32361
- Elsewhere: RCSB PDB 2BE1 · PDBe 2BE1 · UniProt P32361
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