Research workbench
Crystal structure of the putative gluconate kinase from bacillus halodurans, northeast structural genomics target BHR61
Analyse Crystal structure of the putative gluconate kinase from bacillus halodurans… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BDT
- Type
- protein
- Length
- 172 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- BH3686
- UniProt
- Q9K6P2
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | BH3686 | protein | 172 | 51% helix, 17% strand | Q9K6P2 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 87 | 0.43 | 0.79 | 15 | empty |
| 2 | 166 | 0.43 | 0.74 | 26 | SO4 |
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 2BDT · Crystal Structure of the Putative Gluconate Kinase from Bacillus halodurans, Northeast… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9K6P2
- Elsewhere: RCSB PDB 2BDT · PDBe 2BDT · UniProt Q9K6P2
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