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Daae adhesin

Analyse Daae adhesin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2BCM
Type: protein
Length: 413 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: F1845 fimbrial protein
UniProt: P13719
Pockets: 2 · best druggability 0.28

Structure

x-ray diffraction · 2 distinct chains · 4% helix, 59% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, A	F1845 fimbrial protein	protein	138	4% helix, 58% strand	P13719
C	F1845 fimbrial protein	protein	137	4% helix, 60% strand	P13719

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	62	0.28	0.74	15	empty
2	52	0.25	0.73	14	empty

Interfaces

3 interfaces between chains.

B–A · 693 Å² buried · 11 hydrogen bonds · protein-protein
A–C · 681 Å² buried · 13 hydrogen bonds · protein-protein
B–C · 652 Å² buried · 12 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

2BCM · DaaE adhesin · the same entry in another collection · chain B against B, TM-score 1.00
P13719 · AlphaFold monomer V2.0 prediction for F1845 fimbrial protein (P13719) · a predicted model of the same protein · chain C against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P13719
Elsewhere: RCSB PDB 2BCM · PDBe 2BCM · UniProt P13719

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