Research workbench
Acetobacter turbidans alpha-amino acid ester hydrolase
Analyse Acetobacter turbidans alpha-amino acid ester hydrolase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2B9V
- Type
- protein
- Length
- 9,728 residues
- Chains
- 16
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-amino acid ester hydrolase
- EC
- 3.1.1.43
- UniProt
- Q8VRK8
- Pockets
- 20 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P | Alpha-amino acid ester hydrolase (EC 3.1.1.43) | protein | 608 | 24% helix, 29% strand | Q8VRK8 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1118 | 0.81 | 0.83 | 112 | empty |
| 2 | 924 | 0.80 | 0.82 | 93 | empty |
| 3 | 1184 | 0.80 | 0.82 | 129 | empty |
| 4 | 1004 | 0.80 | 0.81 | 85 | empty |
| 5 | 1072 | 0.79 | 0.81 | 79 | empty |
Interfaces
31 interfaces between chains.
- J–L · 1940 Ų buried · 18 hydrogen bonds · protein-protein
- B–D · 1930 Ų buried · 19 hydrogen bonds · protein-protein
- E–G · 1905 Ų buried · 21 hydrogen bonds · protein-protein
- M–O · 1892 Ų buried · 19 hydrogen bonds · protein-protein
- I–K · 1888 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 2B9V · Acetobacter turbidans alpha-amino acid ester hydrolase · the same entry in another collection · chain M against M, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8VRK8
- Elsewhere: RCSB PDB 2B9V · PDBe 2B9V · UniProt Q8VRK8
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