Research workbench
RNA recognition by the VTS1 SAM domain
Analyse RNA recognition by the VTS1 SAM domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2B6G
- Type
- protein + RNA
- Length
- 100 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*GP*GP*AP*GP*GP*CP*UP*CP*UP*GP*GP*CP*AP*GP*CP*UP*UP*UP *C)-3'; VTS1P
Structure
solution nmr · 2 distinct chains · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | 5'-R(*GP*GP*AP*GP*GP*CP*UP*CP*UP*GP*GP*CP*AP*GP*CP*UP*UP*UP *C)-3' | rna | 19 | — | — |
| A | VTS1P | protein | 81 | 72% helix, 0% strand | — |
Interfaces
1 interface between chains.
- B–A · 233 Ų buried · 4 hydrogen bonds · protein-nucleic
Compared structures
- 2B6G · RNA recognition by the Vts1 SAM domain · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2B6G · PDBe 2B6G
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