Research workbench
Crystal structure of catechol 1,2-dioxygenase from pseudomonas arvilla C-1
Analyse Crystal structure of catechol 1,2-dioxygenase from pseudomonas arvilla C-1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2AZQ
- Type
- protein
- Length
- 309 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Catechol 1,2-dioxygenase
- EC
- 1.13.11.1
- UniProt
- Q51433
- Ligands
- PCF, FE
- Pockets
- 2 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Catechol 1,2-dioxygenase (EC 1.13.11.1) | protein | 309 | 27% helix, 22% strand | Q51433 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 294 | 0.59 | 0.78 | 36 | empty |
| 2 | 166 | 0.50 | 0.78 | 29 | empty |
Compared structures
- 2AZQ · Crystal Structure of Catechol 1,2-Dioxygenase from Pseudomonas arvilla C-1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q51433
- Elsewhere: RCSB PDB 2AZQ · PDBe 2AZQ · UniProt Q51433
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