Research workbench
X-ray structure of protein from arabidopsis thaliana AT4G34215 at 1.6 ångström resolution
Analyse X-ray structure of protein from arabidopsis thaliana AT4G34215 at 1.6 ångström… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2APJ
- Type
- protein
- Length
- 966 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative esterase
- UniProt
- O49483
- Pockets
- 7 · best druggability 0.58
Structure
x-ray diffraction · 4 distinct chains · 38% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative esterase | protein | 244 | 38% helix, 19% strand | O49483 |
| B | Putative esterase | protein | 243 | 38% helix, 19% strand | O49483 |
| C | Putative esterase | protein | 241 | 37% helix, 20% strand | O49483 |
| D | Putative esterase | protein | 238 | 38% helix, 20% strand | O49483 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 272 | 0.58 | 0.78 | 39 | empty |
| 2 | 52 | 0.49 | 0.87 | 16 | empty |
| 3 | 191 | 0.48 | 0.75 | 29 | empty |
| 4 | 56 | 0.48 | 0.86 | 17 | empty |
| 5 | 70 | 0.47 | 0.83 | 17 | empty |
Interfaces
3 interfaces between chains.
- A–D · 587 Ų buried · 4 hydrogen bonds · protein-protein
- B–C · 546 Ų buried · 5 hydrogen bonds · protein-protein
- A–B · 477 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (nonstandard).
Compared structures
- 2APJ · X-Ray Structure of Protein from Arabidopsis Thaliana AT4G34215 at 1.6 Angstrom Resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O49483
- Elsewhere: RCSB PDB 2APJ · PDBe 2APJ · UniProt O49483
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