Research workbench
Normal mode-based flexible fitted coordinates of a translocating secyeg protein-conducting channel into the cryo-EM MAP of a secyeg- nascent chain-70S ribosome complex from E. COLI
Analyse Normal mode-based flexible fitted coordinates of a translocating secyeg… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2AKI
- Type
- protein
- Length
- 1,176 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein-export membrane protein secg; Preprotein translocase secy subunit; Preprotein…
- UniProt
- P33582, P03844, P16920
Structure
electron microscopy · 3 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X, A | Protein-export membrane protein secg | protein | 77 | 0% helix, 0% strand | P33582 |
| Y, B | Preprotein translocase secy subunit | protein | 400 | 0% helix, 0% strand | P03844 |
| Z, C | Preprotein translocase sece subunit | protein | 111 | 0% helix, 0% strand | P16920 |
Interfaces
7 interfaces between chains.
- A–B · 76 Ų buried · 0 hydrogen bonds · protein-protein
- Y–B · 73 Ų buried · 0 hydrogen bonds · protein-protein
- X–Y · 49 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 24 Ų buried · 0 hydrogen bonds · protein-protein
- Z–B · 20 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 2AKI · Normal mode-based flexible fitted coordinates of a translocating SecYEG… · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P33582
- Every structure of UniProt P03844
- Every structure of UniProt P16920
- Elsewhere: RCSB PDB 2AKI · PDBe 2AKI · UniProt P33582 · UniProt P03844 · UniProt P16920
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