Research workbench
Unsaturated glucuronyl hydrolase mutant D88N with dglca-galnac
Analyse Unsaturated glucuronyl hydrolase mutant D88N with dglca-galnac in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2AHG
- Type
- protein
- Length
- 754 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Unsaturated glucuronyl hydrolase
- EC
- 3.2.1.-
- UniProt
- Q9RC92
- Ligands
- GCD, NGA
- Pockets
- 4 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Unsaturated glucuronyl hydrolase (EC 3.2.1.-) | protein | 377 | 54% helix, 11% strand | Q9RC92 |
Ligands and binding sites
- GCD · 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid · ligand · 2 copies · chains A, B
- NGA · 2-acetamido-2-deoxy-beta-D-galactopyranose · sugar · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 237 | 0.56 | 0.78 | 30 | NGA, GCD |
| 2 | 90 | 0.43 | 0.79 | 18 | NGA, GCD |
| 3 | 101 | 0.33 | 0.72 | 17 | empty |
| 4 | 76 | 0.29 | 0.72 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 944 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 2AHG · Unsaturated glucuronyl hydrolase mutant D88N with dGlcA-GalNAc · the same entry in another collection · chain A against A, TM-score 1.00
- Q9RC92 · AlphaFold monomer V2.0 prediction for unsaturated glucuronyl hydrolase (Q9RC92) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RC92
- Elsewhere: RCSB PDB 2AHG · PDBe 2AHG · UniProt Q9RC92
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