Research workbench
Solution structure of the bacterial antitoxin ccda: implications for DNA and toxin binding
Analyse Solution structure of the bacterial antitoxin ccda: implications for DNA and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2ADN
- Type
- protein
- Length
- 144 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ccda
- UniProt
- Q9S0Z5
- Pockets
- 2 · best druggability 0.43
Structure
solution nmr · 1 distinct chain · 26% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ccda | protein | 72 | 26% helix, 8% strand | Q9S0Z5 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 151 | 0.43 | 0.75 | 20 | empty |
| 2 | 68 | 0.29 | 0.73 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1841 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 2ADN · Solution structure of the bacterial antitoxin CcdA: Implications for DNA and toxin binding · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9S0Z5
- Elsewhere: RCSB PDB 2ADN · PDBe 2ADN · UniProt Q9S0Z5
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