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Crystal structure of E. COLI protein yajl (thij)

Analyse Crystal structure of E. COLI protein yajl (thij) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2AB0
Type: protein
Length: 390 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Yajl
UniProt: Q46948
Pockets: 2 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Yajl	protein	195	38% helix, 20% strand	Q46948

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.35	0.78	16	empty
2	50	0.30	0.76	14	empty

Interfaces

1 interface between chains.

A–B · 1319 Å² buried · 22 hydrogen bonds · protein-protein

Compared structures

2AB0 · Crystal Structure of E. coli protein YajL (ThiJ) · the same entry in another collection · chain A against A, TM-score 1.00
Q46948 · AlphaFold monomer V2.0 prediction for PROTEIN/NUCLEIC acid deglycase 3 (Q46948) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q46948
Elsewhere: RCSB PDB 2AB0 · PDBe 2AB0 · UniProt Q46948

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