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Complex of tetra-(4-N-methylpyridyl) porphin with monomeric parallel- stranded DNA tetraplex, snap-back 3+1 3' G-tetrad, single-residue chain reversal loops, gag triad in the context of gaag diagonal loop, C-myc promoter, NMR, 6 struct.

Analyse Complex of tetra-(4-N-methylpyridyl) porphin with monomeric parallel- stranded… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2A5R
Type: DNA
Length: 24 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*IP*GP*AP*GP*GP*GP*TP*GP*GP *GP*GP*AP*AP*GP*G)-3'
Ligands: POH
Pockets: 1 · best druggability 0.33

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	5'-D(TPGPAPGPGPGPTPGPGPIPGPAPGPGPGPTPGPGP GPGPAPAPGPG)-3'	dna	24	—	—

Ligands and binding sites

POH · (1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	116	0.33	0.72	10	POH

Compared structures

2A5R · Complex of tetra-(4-n-methylpyridyl) porphin with monomeric parallel-stranded DNA… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2A5R · PDBe 2A5R

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