Research workbench

Carboxysome shell protein CCMK4

Analyse Carboxysome shell protein CCMK4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2A10
Type: protein
Length: 626 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Carbon dioxide concentrating mechanism protein ccmk homolog 4
UniProt: P73407
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 5 distinct chains · 43% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Carbon dioxide concentrating mechanism protein ccmk homolog 4	protein	104	44% helix, 31% strand	P73407
B	Carbon dioxide concentrating mechanism protein ccmk homolog 4	protein	106	42% helix, 31% strand	P73407
C	Carbon dioxide concentrating mechanism protein ccmk homolog 4	protein	107	45% helix, 31% strand	P73407
D, E	Carbon dioxide concentrating mechanism protein ccmk homolog 4	protein	102	44% helix, 32% strand	P73407
F	Carbon dioxide concentrating mechanism protein ccmk homolog 4	protein	105	40% helix, 31% strand	P73407

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	226	0.48	0.75	24	empty

Interfaces

6 interfaces between chains.

A–F · 1104 Å² buried · 8 hydrogen bonds · protein-protein
B–C · 1095 Å² buried · 9 hydrogen bonds · protein-protein
C–D · 1078 Å² buried · 7 hydrogen bonds · protein-protein
D–E · 1077 Å² buried · 8 hydrogen bonds · protein-protein
A–B · 1072 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

2A10 · carboxysome shell protein ccmK4 · the same entry in another collection · chain F against F, TM-score 1.00
P73407 · AlphaFold monomer V2.0 prediction for carboxysome shell protein CCMK4 (P73407) · a predicted model of the same protein · chain E against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P73407
Elsewhere: RCSB PDB 2A10 · PDBe 2A10 · UniProt P73407

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.