Research workbench
Superoxide dismutase protein from plasmodium berghei
Analyse Superoxide dismutase protein from plasmodium berghei in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2A03
- Type
- protein
- Length
- 394 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fe-superoxide dismutase homolog
- EC
- 1.15.1.1
- UniProt
- Q4YW77
- Ligands
- MN, ZN
- Pockets
- 2 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Fe-superoxide dismutase homolog (EC 1.15.1.1) | protein | 197 | 50% helix, 12% strand | Q4YW77 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 233 | 0.56 | 0.78 | 22 | empty |
| 2 | 207 | 0.51 | 0.77 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 990 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 2A03 · Superoxide dismutase protein from plasmodium berghei · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4YW77
- Elsewhere: RCSB PDB 2A03 · PDBe 2A03 · UniProt Q4YW77
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