Research workbench
Alternating and non-alternating dg-dc hexanucleotides crystallize as canonical a-DNA
Analyse Alternating and non-alternating dg-dc hexanucleotides crystallize as canonical… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 254D
- Type
- DNA
- Length
- 12 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*C)-3')
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*C)-3') | dna | 6 | — | — |
Interfaces
1 interface between chains.
- A–B · 290 Ų buried · 23 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 4 modified (nucleotide modification).
Compared structures
- 254D · Alternating and non-alternating dg-dc hexanucleotides crystallize as canonical a-DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 254D · PDBe 254D
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