Research workbench
The crystal structure analysis of D(CGCGAASSCGCG)2: a synthetic DNA dodecamer duplex containing four 4'-thio-2'- deoxythymidine nucleotides
Analyse The crystal structure analysis of D(CGCGAASSCGCG)2: a synthetic DNA dodecamer… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 233D
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*GP*CP*GP*AP*AP*)-D(*(T49)P*(T49) P*)-D(*CP*GP*CP*G)-3')
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*)-D(*(T49)P*(T49) P*)-D(*CP*GP*CP*G)-3') | dna | 12 | — | — |
Interfaces
1 interface between chains.
- A–B · 577 Ų buried · 70 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 4 modified (nucleotide modification).
Compared structures
- 233D · The crystal structure analysis of D(CGCGAASSCGCG)2: a synthetic DNA dodecamer duplex… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 233D · PDBe 233D
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.