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Structure of an RNA double helix including uracil-uracil base pairs in an internal loop

Analyse Structure of an RNA double helix including uracil-uracil base pairs in an… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 205D
Type: RNA
Length: 24 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (5'-R(*GP*GP*AP*CP*UP*UP*UP*GP*GP*UP*CP*C)- 3')
Pockets: 1 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	RNA (5'-R(GPGPAPCPUPUPUPGPGPUPCPC)- 3')	rna	12	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	218	0.41	0.72	19	empty

Interfaces

1 interface between chains.

A–B · 556 Å² buried · 63 hydrogen bonds · nucleic-nucleic

Compared structures

205D · Structure of an RNA double helix including uracil-uracil base pairs in an internal loop · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 205D · PDBe 205D

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