Research workbench
Oxidized structure of the N-terminal domain of salmonella typhimurium ahpf
Analyse Oxidized structure of the N-terminal domain of salmonella typhimurium ahpf in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZYN
- Type
- protein
- Length
- 392 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alkyl hydroperoxide reductase subunit F
- EC
- 1.8.1.-
- UniProt
- P19480
- Pockets
- 6 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Alkyl hydroperoxide reductase subunit F (EC 1.8.1.-) | protein | 196 | 40% helix, 21% strand | P19480 |
Pockets
6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 83 | 0.38 | 0.77 | 19 | empty |
| 2 | 100 | 0.37 | 0.75 | 19 | empty |
| 3 | 96 | 0.36 | 0.75 | 19 | empty |
| 4 | 95 | 0.36 | 0.75 | 22 | empty |
| 5 | 91 | 0.36 | 0.75 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 606 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 1ZYN · Oxidized structure of the N-terminal domain of Salmonella typhimurium AhpF · the same entry in another collection · chain A against A, TM-score 1.00
- P19480 · AlphaFold monomer V2.0 prediction for alkyl hydroperoxide reductase subunit F (P19480) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P19480
- Elsewhere: RCSB PDB 1ZYN · PDBe 1ZYN · UniProt P19480
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.