Research workbench
Crystal structure of hypothetical protein yihe from escherichia COLI
Analyse Crystal structure of hypothetical protein yihe from escherichia COLI in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZYL
- Type
- protein
- Length
- 325 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein yihe
- UniProt
- P0C0K3
- Pockets
- 3 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein yihe | protein | 325 | 45% helix, 12% strand | P0C0K3 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 519 | 0.72 | 0.80 | 51 | empty |
| 2 | 103 | 0.59 | 0.86 | 23 | empty |
| 3 | 54 | 0.31 | 0.76 | 11 | empty |
Compared structures
- 1ZYL · Crystal Structure of Hypothetical Protein YihE from Escherichia coli · the same entry in another collection · chain A against A, TM-score 1.00
- P0C0K3 · AlphaFold monomer V2.0 prediction for stress response kinase a (P0C0K3) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0C0K3
- Elsewhere: RCSB PDB 1ZYL · PDBe 1ZYL · UniProt P0C0K3
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