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Crystal structure of transcription regulator from bacteroides thetaiotaomicron vpi-5482 at 2.15 a resolution

Analyse Crystal structure of transcription regulator from bacteroides thetaiotaomicron… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1ZYB
Type: protein
Length: 230 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transcription regulator, crp family
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transcription regulator, crp family	protein	230	42% helix, 24% strand	—

Ligands and binding sites

GOL · Glycerol · additive · 7 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	317	0.56	0.76	36	GOL

Modifications

Observed in the structure: 5 modified (engineered).

Compared structures

1ZYB · Crystal structure of transcription regulator from Bacteroides thetaiotaomicron VPI-5482… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1ZYB · PDBe 1ZYB

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