Research workbench
Crystal structure of the hypthetical mycoplasma protein, MPN555
Analyse Crystal structure of the hypthetical mycoplasma protein, MPN555 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZXJ
- Type
- protein
- Length
- 748 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein MG377 homolog
- UniProt
- P75223
- Pockets
- 13 · best druggability 0.67
Structure
x-ray diffraction · 4 distinct chains · 60% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein MG377 homolog | protein | 192 | 61% helix, 7% strand | P75223 |
| B | Hypothetical protein MG377 homolog | protein | 171 | 60% helix, 8% strand | P75223 |
| C | Hypothetical protein MG377 homolog | protein | 192 | 61% helix, 7% strand | P75223 |
| D | Hypothetical protein MG377 homolog | protein | 193 | 57% helix, 7% strand | P75223 |
Pockets
13 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 505 | 0.67 | 0.78 | 45 | empty |
| 2 | 190 | 0.56 | 0.79 | 26 | empty |
| 3 | 375 | 0.55 | 0.74 | 37 | empty |
| 4 | 120 | 0.54 | 0.82 | 16 | empty |
| 5 | 303 | 0.53 | 0.74 | 29 | empty |
Interfaces
3 interfaces between chains.
- A–D · 570 Ų buried · 3 hydrogen bonds · protein-protein
- A–B · 458 Ų buried · 9 hydrogen bonds · protein-protein
- B–C · 231 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 1ZXJ · Crystal structure of the hypthetical Mycoplasma protein, MPN555 · the same entry in another collection · chain D against D, TM-score 1.00
- P75223 · AlphaFold monomer V2.0 prediction for uncharacterized protein MG377 homolog (P75223) · a predicted model of the same protein · chain B against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P75223
- Elsewhere: RCSB PDB 1ZXJ · PDBe 1ZXJ · UniProt P75223
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