Research workbench
Structure of the E. COLI parc C-terminal domain
Analyse Structure of the E. COLI parc C-terminal domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZVT
- Type
- protein
- Length
- 491 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Topoisomerase IV subunit a
- EC
- 5.99.1.-
- UniProt
- P20082
- Pockets
- 3 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 10% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Topoisomerase IV subunit a (EC 5.99.1.-) | protein | 245 | 9% helix, 40% strand | P20082 |
| B | Topoisomerase IV subunit a (EC 5.99.1.-) | protein | 246 | 11% helix, 41% strand | P20082 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 751 | 0.79 | 0.83 | 84 | empty |
| 2 | 869 | 0.75 | 0.79 | 77 | empty |
| 3 | 53 | 0.39 | 0.81 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1525 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 1ZVT · Structure of the E. coli ParC C-terminal domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P20082
- Elsewhere: RCSB PDB 1ZVT · PDBe 1ZVT · UniProt P20082
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