Research workbench

X-ray structure of allene oxide cyclase from arabidopsis thaliana AT3G25760

Analyse X-ray structure of allene oxide cyclase from arabidopsis thaliana AT3G25760 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1ZVC
Type: protein
Length: 171 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Allene oxide cyclase
EC: 5.3.99.6
UniProt: Q9LS03
Ligands: MG
Pockets: 1 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Allene oxide cyclase (EC 5.3.99.6)	protein	171	8% helix, 49% strand	Q9LS03

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	109	0.68	0.90	20	empty

Compared structures

1ZVC · X-ray structure of allene oxide cyclase from arabidopsis thaliana AT3G25760 · the same entry in another collection · chain A against A, TM-score 1.00
Q9LS03 · AlphaFold monomer V2.0 prediction for allene oxide cyclase 1, chloroplastic (Q9LS03) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9LS03
Elsewhere: RCSB PDB 1ZVC · PDBe 1ZVC · UniProt Q9LS03

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