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The crystal structure of the lactococcus lactis MG1363 dpsa protein

Analyse The crystal structure of the lactococcus lactis MG1363 dpsa protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1ZUJ
Type: protein
Length: 672 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein LLACC01001955
Pockets: 5 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 74% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Hypothetical protein LLACC01001955	protein	168	74% helix, 0% strand	—

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	578	0.71	0.79	68	empty
2	180	0.53	0.79	30	empty
3	91	0.38	0.77	18	empty
4	100	0.38	0.75	16	empty
5	80	0.30	0.73	18	empty

Interfaces

4 interfaces between chains.

A–B · 1843 Å² buried · 18 hydrogen bonds · protein-protein
C–D · 1798 Å² buried · 19 hydrogen bonds · protein-protein
A–C · 583 Å² buried · 5 hydrogen bonds · protein-protein
A–D · 213 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

1ZUJ · The crystal structure of the Lactococcus lactis MG1363 DpsA protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1ZUJ · PDBe 1ZUJ

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