Research workbench

Solution structure of the RIM1ALPHA PDZ domain in complex with an ELKS1B C-terminal peptide

Analyse Solution structure of the RIM1ALPHA PDZ domain in complex with an ELKS1B… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1ZUB
Type: protein
Length: 115 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Regulating synaptic membrane exocytosis protein 1; ELKS1B
UniProt: Q9JIR4, Q811U3

Structure

solution nmr · 2 distinct chains · 16% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Regulating synaptic membrane exocytosis protein 1	protein	109	17% helix, 31% strand	Q9JIR4
B	ELKS1B	protein	6	0% helix, 17% strand	Q811U3

Interfaces

1 interface between chains.

A–B · 537 Å² buried · 14 hydrogen bonds · protein-protein

Compared structures

1ZUB · Solution Structure of the RIM1alpha PDZ Domain in Complex with an ELKS1b C-terminal… · the same entry in another collection · chain A against A, TM-score 1.00
Q9JIR4 · AlphaFold monomer V2.0 prediction for regulating synaptic membrane exocytosis protein 1… · a predicted model of the same protein · chain A against A, TM-score 0.87
Q811U3 · AlphaFold monomer V2.0 prediction for ELKS/RAB6-INTERACTING/CAST family member 1 (Q811U3) · a predicted model of the same protein · chain B against A, TM-score 0.59

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9JIR4
Every structure of UniProt Q811U3
Elsewhere: RCSB PDB 1ZUB · PDBe 1ZUB · UniProt Q9JIR4 · UniProt Q811U3

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.